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| - | In this exercise user should obtain prepared simple job, extract archive, list content of files, submit job on PARADOX cluster and monitor his progress with information from queue.
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| - | 1. Login on ui.ipb.ac.rs:
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| - | $ ssh ngrkic@ui.ipb.ac.rs
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| - | 2. Navigate to your folder in nfs filesystem.
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| - | $ cd /nfs/ngrkic
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| - | 3. Download tgz archive with example files.
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| - | $ wget http://wiki.ipb.ac.rs/images/d/db/Serial.tgz
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| - | 4. Extract archive :
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| - | $ tar xvzf Serial.tgz
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| - | 5. Enter Serial folder :
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| - | $ cd Serial
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| - | 6. List content of folder:
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| - | $ ll
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| - | 7. List content of job.pbs and job.sh files:
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| - | $ cat job.pbs
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| - | #!/bin/bash
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| - | #PBS -q hpsee
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| - | #PBS -l nodes=1:ppn=1
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| - | #PBS -l walltime=10:00:00
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| - | #PBS -e ${PBS_JOBID}.err
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| - | #PBS -o ${PBS_JOBID}.out
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| - | cd $PBS_O_WORKDIR
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| - | chmod +x job.sh
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| - | ./job.sh
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| - | cat job.sh
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| - |
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| - | #!/bin/bash
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| - | date
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| - | hostname
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| - | pwd
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| - | sleep 120
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| - | 8. Submit job :
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| - | qsub job.pbs
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| - | qsub will print output :
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| - | <jobID>.ce64.ipb.ac.rs
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| - | 9. Monitor your job :
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| - | qstat <jobID>.ce64.ipb.ac.rs
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| - | 10. After two minutes your job will be done. List content of <jobID>.ce64.ipb.ac.rs.out file :
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| - | cat <jobID>.ce64.ipb.ac.rs.out
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| - | Tue Oct 11 21:42:58 CEST 2011
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| - | n08.ipb.ac.rs
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| - | /nfs/ngrkic/serial
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Latest revision as of 22:34, 12 October 2011
