Simple Job

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(New page: '''Submiting single job how to''' This is simple single job submiting example. It does not requre some high skills and knowing JDL language. For demonstration use attached file. 1.Extr...)
 
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This is simple single job submitting example.
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Executing script will list first and second argument.Arguments are fileA and fileB. For demonstration use attached file.
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'''Submiting single job how to'''
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[http://wiki.ipb.ac.rs/images/d/d8/Single.tgz single.tgz]
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[http://wiki.ipb.ac.rs/images/3/34/Single2.tgz Single2.tgz]
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This is simple single job submiting example.
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[http://wiki.ipb.ac.rs/images/0/04/Single_advanced.tgz Single_advanced.tgz]
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It does not requre some high skills and knowing JDL language.
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For demonstration use attached file.
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1.Extract file with:
1.Extract file with:
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   [ngrkic@ui ~]$ tar -xzf single.tar.gz
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   [ngrkic@ui ~]$ tar xvzf single.tgz
2.Enter directory single with:
2.Enter directory single with:
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  -rw-rw-r--  1 ngrkic ngrkic 184 Oct  1 13:00 single.jdl
  -rw-rw-r--  1 ngrkic ngrkic 184 Oct  1 13:00 single.jdl
  -rw-rw-r--  1 ngrkic ngrkic  63 Sep 30 23:42 test.sh
  -rw-rw-r--  1 ngrkic ngrkic  63 Sep 30 23:42 test.sh
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This is content of files
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[ngrkic@ui single]$ cat fileA
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This is first file....
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[ngrkic@ui single]$ cat fileB
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This is second file...
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[ngrkic@ui single]$ cat test.sh
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#!/bin/sh
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echo "First file:"
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cat $1
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echo "Second file:"
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cat $2
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[ngrkic@ui single]$ cat single.jdl
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Executable = "test.sh";
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Arguments = "fileA  fileB";
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StdOutput = "std.out";
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StdError = "std.err";
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InputSandbox = {"test.sh", "fileA", "fileB"};
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OutputSandbox = {"std.out", "std.err"};
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4.Creating VOMS proxy:
4.Creating VOMS proxy:
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  Your proxy is valid until Fri Oct  2 01:11:00 2009 </code>
  Your proxy is valid until Fri Oct  2 01:11:00 2009 </code>
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Now we are ready to submit job.
 
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  [ngrkic@ui single]$ glite-wms-job-submit -a single.jdl
  [ngrkic@ui single]$ glite-wms-job-submit -a single.jdl
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  Connecting to the service https://wms-aegis.ipb.ac.rs:7443/glite_wms_wmproxy_server
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  Connecting to the service <nowiki>https://wms-aegis.ipb.ac.rs:7443/glite_wms_wmproxy_server</nowiki>
   
   
  ====================== glite-wms-job-submit Success ======================
  ====================== glite-wms-job-submit Success ======================
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  Your job identifier is:
  Your job identifier is:
   
   
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  https://wms-aegis.ipb.ac.rs:9000/aV8X3jGTiR0cRSsfxhr3nA
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  <nowiki>https://wms-aegis.ipb.ac.rs:9000/aV8X3jGTiR0cRSsfxhr3nA</nowiki>
   
   
  ==========================================================================
  ==========================================================================
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6.Requesting Job status:
6.Requesting Job status:
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  [ngrkic@ui single]$ glite-wms-job-status https://wms-aegis.ipb.ac.rs:9000/aV8X3jGTiR0cRSsfxhr3nA
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  [ngrkic@ui single]$ glite-wms-job-status <nowiki>https://wms-aegis.ipb.ac.rs:9000/aV8X3jGTiR0cRSsfxhr3nA</nowiki>
   
   
   
   
  *************************************************************
  *************************************************************
  BOOKKEEPING INFORMATION:
  BOOKKEEPING INFORMATION:
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  Status info for the Job : https://wms-aegis.ipb.ac.rs:9000/aV8X3jGTiR0cRSsfxhr3nA
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  Status info for the Job : <nowiki>https://wms-aegis.ipb.ac.rs:9000/aV8X3jGTiR0cRSsfxhr3nA</nowiki>
  Current Status:    Done (Success)
  Current Status:    Done (Success)
  Logged Reason(s):
  Logged Reason(s):
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7.Requesting Job output:
7.Requesting Job output:
   
   
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  [ngrkic@ui single]$ glite-wms-job-output --dir /home/ngrkic/test https://wms-aegis.ipb.ac.rs:9000/aV8X3jGTiR0cRSsfxhr3nA
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  [ngrkic@ui single]$ glite-wms-job-output --dir /home/ngrkic/test <nowiki>https://wms-aegis.ipb.ac.rs:9000/aV8X3jGTiR0cRSsfxhr3nA
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</nowiki>
  ================================================================================
  ================================================================================
   
   
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  Output sandbox files for the job:
  Output sandbox files for the job:
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  https://wms-aegis.ipb.ac.rs:9000/aV8X3jGTiR0cRSsfxhr3nA
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  <nowiki>https://wms-aegis.ipb.ac.rs:9000/aV8X3jGTiR0cRSsfxhr3nA</nowiki>
  have been successfully retrieved and stored in the directory:
  have been successfully retrieved and stored in the directory:
  /home/ngrkic/test
  /home/ngrkic/test
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  [ngrkic@ui ~]$ cd test
  [ngrkic@ui ~]$ cd test
  [ngrkic@ui ~]$ cat std.out
  [ngrkic@ui ~]$ cat std.out
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First file:
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This is first file....
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Second file:
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This is second file...
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----

Latest revision as of 09:47, 27 May 2012

This is simple single job submitting example. Executing script will list first and second argument.Arguments are fileA and fileB. For demonstration use attached file.

single.tgz

Single2.tgz

Single_advanced.tgz

1.Extract file with: 

 [ngrkic@ui ~]$ tar xvzf single.tgz

2.Enter directory single with: 

 [ngrkic@ui ~]$ cd single

3.List directory: 

 [ngrkic@ui single]$ ll

-rw-rw-r--  1 ngrkic ngrkic  23 Sep 30 23:43 fileA
-rw-rw-r--  1 ngrkic ngrkic  23 Sep 30 23:43 fileB
-rw-rw-r--  1 ngrkic ngrkic 184 Oct  1 13:00 single.jdl
-rw-rw-r--  1 ngrkic ngrkic  63 Sep 30 23:42 test.sh

This is content of files 

[ngrkic@ui single]$ cat fileA 

This is first file....

[ngrkic@ui single]$ cat fileB

This is second file...

[ngrkic@ui single]$ cat test.sh 
#!/bin/sh
echo "First file:"
cat $1
echo "Second file:"
cat $2



[ngrkic@ui single]$ cat single.jdl 

Executable = "test.sh";
Arguments = "fileA  fileB";
StdOutput = "std.out";
StdError = "std.err";
InputSandbox = {"test.sh", "fileA", "fileB"};
OutputSandbox = {"std.out", "std.err"};


4.Creating VOMS proxy: 

[ngrkic@ui single]$ voms-proxy-init -voms aegis

Cannot find file or dir: /home/ngrkic/.glite/vomses
Enter GRID pass phrase:
Your identity: /C=RS/O=AEGIS/OU=Institute of Physics Belgrade/CN=Nikola Grkic
Creating temporary proxy ......................... Done
Contacting  voms.ipb.ac.rs:15001 [/C=RS/O=AEGIS/OU=Institute of Physics Belgrade/CN=host/voms.ipb.ac.rs] "aegis" Done
Creating proxy ..................................................... Done
Your proxy is valid until Fri Oct  2 01:11:00 2009 </code>


5.Submiting single job: 

[ngrkic@ui single]$ glite-wms-job-submit -a single.jdl

Connecting to the service https://wms-aegis.ipb.ac.rs:7443/glite_wms_wmproxy_server

====================== glite-wms-job-submit Success ======================

The job has been successfully submitted to the WMProxy 
Your job identifier is:

https://wms-aegis.ipb.ac.rs:9000/aV8X3jGTiR0cRSsfxhr3nA

==========================================================================


Copy the job ID.Job is running now, and it should finish in few moments...


6.Requesting Job status: 

[ngrkic@ui single]$ glite-wms-job-status https://wms-aegis.ipb.ac.rs:9000/aV8X3jGTiR0cRSsfxhr3nA


*************************************************************
BOOKKEEPING INFORMATION:
Status info for the Job : https://wms-aegis.ipb.ac.rs:9000/aV8X3jGTiR0cRSsfxhr3nA
Current Status:     Done (Success)
Logged Reason(s):
   - 
   - Job terminated successfully
Exit code:          0
Status Reason:      Job terminated successfully
Destination:        grid01.rcub.bg.ac.rs:2119/jobmanager-pbs-aegis
Submitted:          Thu Oct  1 13:38:10 2009 CEST
*************************************************************

7.Requesting Job output: 

[ngrkic@ui single]$ glite-wms-job-output --dir /home/ngrkic/test https://wms-aegis.ipb.ac.rs:9000/aV8X3jGTiR0cRSsfxhr3nA

================================================================================

			JOB GET OUTPUT OUTCOME

Output sandbox files for the job:
https://wms-aegis.ipb.ac.rs:9000/aV8X3jGTiR0cRSsfxhr3nA
have been successfully retrieved and stored in the directory:
/home/ngrkic/test

================================================================================

8.Go to test directory and see output with commands: 

[ngrkic@ui single]$ cd 
[ngrkic@ui ~]$ cd test
[ngrkic@ui ~]$ cat std.out
First file:
This is first file....
Second file:
This is second file...


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