Simple Job

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It does not requre some high skills and knowing JDL language.
It does not requre some high skills and knowing JDL language.
For demonstration use attached file.
For demonstration use attached file.
-
  http://wiki.ipb.ac.rs/images/c/cd/Single.zip
+
   
 +
[http://wiki.ipb.ac.rs/images/c/cd/Single.zip Single.zip]
1.Extract file with:
1.Extract file with:

Revision as of 21:14, 5 October 2009

Submiting single job how-to


This is simple single job submiting example. It does not requre some high skills and knowing JDL language. For demonstration use attached file.

Single.zip

1.Extract file with:

 [ngrkic@ui ~]$ unzip single.zip

2.Enter directory single with:

 [ngrkic@ui ~]$ cd single

3.List directory:

 [ngrkic@ui single]$ ll

-rw-rw-r--  1 ngrkic ngrkic  23 Sep 30 23:43 fileA
-rw-rw-r--  1 ngrkic ngrkic  23 Sep 30 23:43 fileB
-rw-rw-r--  1 ngrkic ngrkic 184 Oct  1 13:00 single.jdl
-rw-rw-r--  1 ngrkic ngrkic  63 Sep 30 23:42 test.sh

This is content of files

[ngrkic@ui single]$ cat fileA 
This is first file....
[ngrkic@ui single]$ cat fileB
This is second file...
[ngrkic@ui single]$ cat test.sh 
#!/bin/sh
echo "First file:"
cat $1
echo "Second file:"
cat $2

This is file for submitting on grid.It will execute script which will list first and second argument.Arguments are fileA and fileB.

[ngrkic@ui single]$ cat single.jdl 
Executable = "test.sh";
Arguments = "fileA  fileB";
StdOutput = "std.out";
StdError = "std.err";
InputSandbox = {"test.sh", "fileA", "fileB"};
OutputSandbox = {"std.out", "std.err"};


4.Creating VOMS proxy:

[ngrkic@ui single]$ voms-proxy-init -voms aegis
Cannot find file or dir: /home/ngrkic/.glite/vomses
Enter GRID pass phrase:
Your identity: /C=RS/O=AEGIS/OU=Institute of Physics Belgrade/CN=Nikola Grkic
Creating temporary proxy ......................... Done
Contacting  voms.ipb.ac.rs:15001 [/C=RS/O=AEGIS/OU=Institute of Physics Belgrade/CN=host/voms.ipb.ac.rs] "aegis" Done
Creating proxy ..................................................... Done
Your proxy is valid until Fri Oct  2 01:11:00 2009 </code>


Now we are ready to submit job.


5.Submiting single job:

[ngrkic@ui single]$ glite-wms-job-submit -a single.jdl
Connecting to the service https://wms-aegis.ipb.ac.rs:7443/glite_wms_wmproxy_server

====================== glite-wms-job-submit Success ======================

The job has been successfully submitted to the WMProxy 
Your job identifier is:

https://wms-aegis.ipb.ac.rs:9000/aV8X3jGTiR0cRSsfxhr3nA

==========================================================================


Copy the job ID.Job is running now, and it should finish in few moments...


6.Requesting Job status:

[ngrkic@ui single]$ glite-wms-job-status https://wms-aegis.ipb.ac.rs:9000/aV8X3jGTiR0cRSsfxhr3nA


*************************************************************
BOOKKEEPING INFORMATION:
Status info for the Job : https://wms-aegis.ipb.ac.rs:9000/aV8X3jGTiR0cRSsfxhr3nA
Current Status:     Done (Success)
Logged Reason(s):
   - 
   - Job terminated successfully
Exit code:          0
Status Reason:      Job terminated successfully
Destination:        grid01.rcub.bg.ac.rs:2119/jobmanager-pbs-aegis
Submitted:          Thu Oct  1 13:38:10 2009 CEST
*************************************************************

7.Requesting Job output:

[ngrkic@ui single]$ glite-wms-job-output --dir /home/ngrkic/test https://wms-aegis.ipb.ac.rs:9000/aV8X3jGTiR0cRSsfxhr3nA
================================================================================

			JOB GET OUTPUT OUTCOME

Output sandbox files for the job:
https://wms-aegis.ipb.ac.rs:9000/aV8X3jGTiR0cRSsfxhr3nA
have been successfully retrieved and stored in the directory:
/home/ngrkic/test

================================================================================

8.Go to test directory and see output with commands:

[ngrkic@ui single]$ cd 
[ngrkic@ui ~]$ cd test
[ngrkic@ui ~]$ cat std.out
First file:
This is first file....
Second file:
This is second file...



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