Parametric Job

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Revision as of 10:35, 12 October 2009

Submiting parametric job how to

This is simple parametric job submiting example. For demonstration use attached file.

parametric.zip

1.Extract file with:

[ngrkic@ui ~]$ unzip parametric.zip

2.Enter directory single with:

[ngrkic@ui ~]$ cd parametric

3.List directory:

[ngrkic@ui parametric]$ ll

-rw-rw-r--  1 ngrkic ngrkic  22 Oct  2 11:29 message0.sh
-rw-rw-r--  1 ngrkic ngrkic  22 Oct  2 11:29 message2.sh
-rw-rw-r--  1 ngrkic ngrkic  22 Oct  2 11:29 message4.sh 
-rw-rw-r--  1 ngrkic ngrkic 383 Oct  2 11:29 parametric.jdl

This is content of file message0.sh

echo message number 0

This is content of file parametric.jdl

[   JobType = "Parametric";
    Executable = "/bin/sh";
    Arguments = "message_PARAM_.sh";
    InputSandbox = "message_PARAM_.sh";
    Parameters= 6;
    ParameterStep =2;
    ParameterStart = 0;
    StdOutput = "myoutput_PARAM_.txt";
    StdError = "myerror_PARAM_.txt";
    OutputSandbox  = {"myoutput_PARAM_.txt", "myerror_PARAM_.txt"};
    ShallowRetryCount = 1; ] 

Script message_PARAM_.sh will just print "message number _PARAM_ " where _PARAM_ is value of parameter.Second file is parametric.jdl.In this case number of parameter is 6, but the ParameterStep is 2, which means that every second parameter will be used in this job.

4.Creating VOMS proxy:

[ngrkic@ui parametric]$ voms-proxy-init -voms aegis

Cannot find file or dir: /home/ngrkic/.glite/vomses
Enter GRID pass phrase:
Your identity: /C=RS/O=AEGIS/OU=Institute of Physics Belgrade/CN=Nikola Grkic
Creating temporary proxy ......................... Done
Contacting  voms.ipb.ac.rs:15001 [/C=RS/O=AEGIS/OU=Institute of Physics Belgrade/CN=host/voms.ipb.ac.rs] "aegis" Done
Creating proxy ..................................................... Done
Your proxy is valid until Fri Oct  2 01:11:00 2009

Now we are ready to submit job.

5.Submiting single job:

[ngrkic@ui parametric]$ glite-wms-job-submit -a parametric.jdl 

Connecting to the service https://wms-aegis.ipb.ac.rs:7443/glite_wms_wmproxy_server


====================== glite-wms-job-submit Success ======================

The job has been successfully submitted to the WMProxy
Your job identifier is:

https://wms-aegis.ipb.ac.rs:9000/Vh8g7EU-gCH9LRDnhbx5iw

==========================================================================

Copy the job ID.Job is running now, and it should finish in few moments...

6.Requesting Job status:

[ngrkic@ui parametric]$ glite-wms-job-status https://wms-aegis.ipb.ac.rs:9000/Vh8g7EU-gCH9LRDnhbx5iw


*************************************************************
BOOKKEEPING INFORMATION:

Status info for the Job : https://wms-aegis.ipb.ac.rs:9000/Vh8g7EU-gCH9LRDnhbx5iw
Current Status:     Done (Success)
Exit code:          0
Submitted:          Fri Oct  2 11:40:25 2009 CEST
*************************************************************

- Nodes information for: 
    Status info for the Job : https://wms-aegis.ipb.ac.rs:9000/8ZKpCDU01saOfQj_S4JFqg
    Current Status:     Done (Success)
    Logged Reason(s):
        - 
        - Job terminated successfully
    Exit code:          0
    Status Reason:      Job terminated successfully
    Destination:        grid-ce.etf.bg.ac.rs:2119/jobmanager-pbs-aegis
    Submitted:          Fri Oct  2 11:40:25 2009 CEST
*************************************************************
    
    Status info for the Job : https://wms-aegis.ipb.ac.rs:9000/IvbGjKoP1vzF1mCG8jgyZg
    Current Status:     Done (Success)
    Exit code:          0
    Status Reason:      Job terminated successfully
    Destination:        grid01.elfak.ni.ac.rs:2119/jobmanager-pbs-aegis
    Submitted:          Fri Oct  2 11:40:25 2009 CEST
*************************************************************
    
    Status info for the Job : https://wms-aegis.ipb.ac.rs:9000/msglck3KPVDh3CytDDu_ow
    Current Status:     Done (Success)
    Logged Reason(s):
        - 
        - Job terminated successfully
    Exit code:          0
    Status Reason:      Job terminated successfully
    Destination:        grid01.rcub.bg.ac.rs:2119/jobmanager-pbs-aegis
    Submitted:          Fri Oct  2 11:40:25 2009 CEST
*************************************************************

7.Requesting Job output:

[ngrkic@ui parametric]$ glite-wms-job-output --dir /home/ngrkic/test https://wms-aegis.ipb.ac.rs:9000/Vh8g7EU-gCH9LRDnhbx5iw

================================================================================

			JOB GET OUTPUT OUTCOME

Output sandbox files for the DAG/Collection :
https://wms-aegis.ipb.ac.rs:9000/Vh8g7EU-gCH9LRDnhbx5iw
have been successfully retrieved and stored in the directory:
/home/ngrkic/test

================================================================================

8.Go to test directory and see output with commands:

[ngrkic@ui parametric]$ cd 
[ngrkic@ui single]$ cd test 
[ngrkic@ui test]$ ll
total 16
-rw-rw-r--  1 ngrkic ngrkic  463 Oct  2 12:21 ids_nodes.map
drwxr-xr-x  2 ngrkic ngrkic 4096 Oct  2 11:26 Node_0
drwxr-xr-x  2 ngrkic ngrkic 4096 Oct  2 11:26 Node_2
drwxr-xr-x  2 ngrkic ngrkic 4096 Oct  2 11:26 Node_4

For each node there is folder with myerror.txt and myoutput.txt files.

[ngrkic@ui test]$ cd Node_2
[ngrkic@ui Node_2]$ ll
-rw-rw-r--  1 ngrkic ngrkic  0 Oct  2 12:21 myerror2.txt
-rw-rw-r--  1 ngrkic ngrkic 17 Oct  2 12:21 myoutput2.txt
[ngrkic@ui Node_2]$cat myoutput2.txt
message number 2