Job collection

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This is job collection  submiting example.
This is job collection  submiting example.
It does not requre some high skills and knowing JDL language.
It does not requre some high skills and knowing JDL language.
-
Collection of two simple jobs.First will print hostname , and second will print date.
+
Collection of two simple jobs. First will print hostname , and second will print date.  
For demonstration use attached file.
For demonstration use attached file.

Revision as of 08:46, 13 October 2009

Submiting job collection How-to


This is job collection submiting example. It does not requre some high skills and knowing JDL language. Collection of two simple jobs. First will print hostname , and second will print date. For demonstration use attached file.

jdlcollection.zip

1.Extract file with:

 [ngrkic@ui ~]$ unzip jdlcollection.zip

2.Enter directory jdlcollection with:

 [ngrkic@ui ~]$ cd jdlcollection

3.List directory:

[ngrkic@jdlcollection ~]$ ll
-rw-rw-r--  1 ngrkic ngrkic 115 Oct  1 14:07 job1.jdl
-rw-rw-r--  1 ngrkic ngrkic 115 Oct  1 14:17 job2.jdl

Content of file job1.jdl

[ngrkic@ui jdlcollection]$ cat job1.jdl 
Executable = "/bin/hostname";
StdOutput = "std.out";
StdError = "std.err";
OutputSandbox = {"std.out","std.err"};

Content of file job2.jdl

[ngrkic@ui jdlcollection]$ cat job2.jdl 
Executable = "/bin/date";
StdOutput = "std2.out";
StdError = "std2.err";
OutputSandbox = {"std2.out","std2.err"};


Then return one folder up with :

[ngrkic@jdlcollection ~]$ cd ..

4.Creating VOMS proxy:

[ngrkic@ui ~]$ voms-proxy-init -voms aegis
Cannot find file or dir: /home/ngrkic/.glite/vomses
Enter GRID pass phrase:
Your identity: /C=RS/O=AEGIS/OU=Institute of Physics Belgrade/CN=Nikola Grkic
Creating temporary proxy ......................... Done
Contacting  voms.ipb.ac.rs:15001 [/C=RS/O=AEGIS/OU=Institute of Physics Belgrade/CN=host/voms.ipb.ac.rs] "aegis" Done
Creating proxy ..................................................... Done
Your proxy is valid until Fri Oct  2 01:11:00 2009


Now we are ready to submit job collection.


5.Submiting job collection:

[ngrkic@ui ~]$ glite-wms-job-submit -a --collection jdlcollection
Connecting to the service https://wms-aegis.ipb.ac.rs:7443/glite_wms_wmproxy_server


====================== glite-wms-job-submit Success ======================

The job has been successfully submitted to the WMProxy
Your job identifier is: 

https://wms-aegis.ipb.ac.rs:9000/e00XBJLV2BRYWfDxOfHL6g

==========================================================================


Copy the job ID.Job is running now, and it should finish in few moments...


6.Requesting Job status:

[ngrkic@ui ~]$ glite-wms-job-status https://wms-aegis.ipb.ac.rs:9000/e00XBJLV2BRYWfDxOfHL6g

*************************************************************
BOOKKEEPING INFORMATION: 

Status info for the Job : https://wms-aegis.ipb.ac.rs:9000/e00XBJLV2BRYWfDxOfHL6g
Current Status:     Done (Success)
Exit code:          0
Submitted:          Thu Oct  1 14:50:50 2009 CEST
*************************************************************

- Nodes information for: 
    Status info for the Job : https://wms-aegis.ipb.ac.rs:9000/7Vhpq3YM3OJIPGfB_yEQzA
    Current Status:     Done (Success)
    Logged Reason(s):
       - 
        - Job terminated successfully
    Exit code:          0
    Status Reason:      Job terminated successfully
    Destination:        cluster1.csk.kg.ac.rs:2119/jobmanager-pbs-aegis
    Submitted:          Thu Oct  1 14:50:50 2009 CEST
*************************************************************
    
    Status info for the Job : https://wms-aegis.ipb.ac.rs:9000/heZyUPQvY4_kFD3V-vzIbQ
    Current Status:     Done (Success)
    Logged Reason(s):
        - 
        - Job terminated successfully
    Exit code:          0
    Status Reason:      Job terminated successfully
    Destination:        grid-ce.etf.bg.ac.rs:2119/jobmanager-pbs-aegis
    Submitted:          Thu Oct  1 14:50:50 2009 CEST
*************************************************************


7.Requesting Job output:

[ngrkic@ui ~]$ glite-wms-job-output --dir /home/ngrkic/test/ https://wms-aegis.ipb.ac.rs:9000/e00XBJLV2BRYWfDxOfHL6g

Connecting to the service https://wms-aegis.ipb.ac.rs:7443/glite_wms_wmproxy_server


================================================================================

			JOB GET OUTPUT OUTCOME

Output sandbox files for the DAG/Collection :
https://wms-aegis.ipb.ac.rs:9000/e00XBJLV2BRYWfDxOfHL6g
have been successfully retrieved and stored in the directory:
/home/ngrkic/test

================================================================================ 
 

8.Go to test directory and see output with commands:

[ngrkic@ui ~]$ cd 
[ngrkic@ui ~]$ cd test
[ngrkic@ui test]$ ll
-rw-rw-r--  1 ngrkic ngrkic  359 Oct  1 15:14 ids_nodes.map
drwxr-xr-x  2 ngrkic ngrkic 4096 Oct  1 14:41 Node_job1_jdl
drwxr-xr-x  2 ngrkic ngrkic 4096 Oct  1 14:41 Node_job2_jdl


For each job there is folder with output and error file.You can see content with cat command.

[ngrkic@ui test]$cd Node_job1_jdl
[ngrkic@ui Node_job1_jdl]$ cat std.out 
rti30.etf.bg.ac.rs
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